Modellierung biomolekularer Systeme

Publikationen

Laun, Konstantin; Duffus, Benjamin R.; Wahlefeld, Stefan; Katz, Sagie; Belger, Dennis; Hildebrandt, Peter; Mroginski, Maria Andrea; Leimkuehler, Silke; Zebger, Ingo
Infrared Spectroscopy Elucidates the Inhibitor Binding Sites in a Metal-Dependent Formate Dehydrogenase
CHEMISTRY-A EUROPEAN JOURNAL
ISSN: 0947-6539

2022

Ji, Yuxuan; Wei, Li; Da, Anqi; Stark, Holger; Hagedoorn, Peter-Leon; Ciofi-Baffoni, Simone; Cowley, Sally A.; Louro, Ricardo O.; Todorovic, Smilja; Mroginski, Maria Andrea; Nicolet, Yvain; Roessler, Maxie M.; Le Brun, Nick E.; Piccioli, Mario; James, William S.; Hagen, Wilfred R.; Ebrahimi, Kourosh H.
Radical-SAM dependent nucleotide dehydratase (SAND), rectification of the names of an ancient iron-sulfur enzyme using NC-IUBMB recommendations
FRONTIERS IN MOLECULAR BIOSCIENCES, 9
Oktober 2022
Moubarak, Samah; Rippers, Yvonne; Elghobashi-Meinhardt, Nadia; Mroginski, Maria Andrea
Structural and electronic properties of the active site of [ZnFe] SulE
FRONTIERS IN MOLECULAR BIOSCIENCES, 9
Oktober 2022
Miller, Anne-Frances; Mohamed-Raseek, Nishya; Das, Debarati; Duan, H. Diessel; Viegas, Maria Gonzalez; Mroginski, Maria-Andrea
The Contrasting Roles of Flavins in Electron Bifurcation: How the Protein Environment Makes These Possible
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS, 1863 (S) :2
September 2022
ISSN: 0005-2728
Dragelj, Jovan; Mroginski, Maria Andrea; Ebrahimi, Kourosh H.
Hidden in Plain Sight: Natural Products of Commensal Microbiota as an Environmental Selection Pressure for the Rise of New Variants of SARS-CoV-2 (vol 22, pg 2946, 2021)
CHEMBIOCHEM, 23 (15)
August 2022
ISSN: 1439-4227
Yang, Yang; Stensitzki, Till; Sauthof, Luisa; Schmidt, Andrea; Piwowarski, Patrick; Velazquez Escobar, Francisco; Michael, Norbert; Nguyen, Anh Duc; Szczepek, Michal; Brunig, Florian Nikolas; Netz, Roland Rudiger; Mroginski, Maria Andrea; Adam, Suliman; Bartl, Franz; Schapiro, Igor; Hildebrandt, Peter; Scheerer, Patrick; Heyne, Karsten
Ultrafast proton-coupled isomerization in the phototransformation of phytochrome
NATURE CHEMISTRY, 14 (7) :823+
Juli 2022
ISSN: 1755-4330
Lopez, Maria Fernandez; Dahl, Margarethe; Escobar, Francisco Velazquez; Ruy Bonomi, Hernan; Kraskov, Anastasia; Michael, Norbert; Mroginski, Maria Andrea; Scheerer, Patrick; Hildebrandt, Peter
Photoinduced reaction mechanisms in prototypical and bathy phytochromes
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 24 (19) :11967-11978
Mai 2022
ISSN: 1463-9076

2021

Otero, Lisandro H.; Foscaldi, Sabrina; Antelo, Giuliano T.; Rosano, German L.; Sirigu, Serena; Klinke, Sebastian; Defelipe, Lucas A.; Sanchez-Lamas, Maximiliano; Battocchio, Giovanni; Conforte, Valeria; Vojnov, Adrian A.; Chavas, Leonard M. G.; Goldbaum, Fernando A.; Mroginski, Maria-Andrea; Rinaldi, Jimena; Bonomi, Hernan R.
Structural basis for the Pr-Pfr long-range signaling mechanism of a full-length bacterial phytochrome at the atomic level
SCIENCE ADVANCES, 7 (48)
November 2021
ISSN: 2375-2548
Kar, Rajiv K.; Chasen, Sam; Mroginski, Maria-Andrea; Miller, Anne-Frances
Tuning the Quantum Chemical Properties of Flavins via Modification at C8
JOURNAL OF PHYSICAL CHEMISTRY B, 125 (46) :12654-12669
November 2021
ISSN: 1520-6106
Theiß, Maximilian; Grupe, Merten; Lamparter, Tilman; Mroginski, Maria Andrea; Diller, Rolf
Ultrafast proton release reaction and primary photochemistry of phycocyanobilin in solution observed with fs-time-resolved mid-IR and UV/Vis spectroscopy
Photochemical & Photobiological Sciences, 20 (6) :715–732
Juni 2021
ISSN: 1474-9092
Kruse, Fabian; Nguyen, Anh Duc; Dragelj, Jovan; Heberle, Joachim; Hildebrandt, Peter; Mroginski, Maria Andrea; Weidinger, Inez M.
A Resonance Raman Marker Band Characterizes the Slow and Fast Form of Cytochrome c Oxidase
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 143 (7) :2769-2776
Februar 2021
ISSN: 0002-7863
Elghobashi-Meinhardt, Nadia; Tombolelli, Daria; Mroginski, Maria Andrea
Electronic and Structural Properties of the Double Cubane Iron-Sulfur Cluster
CATALYSTS, 11 (2)
Februar 2021
Dragelj, Jovan; Mroginski, Maria Andrea; Knapp, Ernst Walter
Beating Heart of Cytochrome c Oxidase: The Shared Proton of Heme a3 Propionates
The Journal of Physical Chemistry B, 125 (34) :9668-9677
2021
Hontani, Yusaku; Baloban, Mikhail; Escobar, Francisco Velazquez; Jansen, Swetta A.; Shcherbakova, Daria M.; Weissenborn, Jorn; Kloz, Miroslav; Mroginski, Maria Andrea; Verkhusha, Vladislav V.; Kennis, John T. M.
Real-time observation of tetrapyrrole binding to an engineered bacterial phytochrome
COMMUNICATIONS CHEMISTRY, 4 (1)
Januar 2021
ISSN: 2399-3669
Mroginski, Maria-Andrea; Adam, Suliman; Amoyal, Gil S.; Barnoy, Avishai; Bondar, Ana-Nicoleta; Borin, Veniamin A.; Church, Jonathan R.; Domratcheva, Tatiana; Ensing, Bernd; Fanelli, Francesca; Ferré, Nicolas; Filiba, Ofer; Pedraza-González, Laura; González, Ronald; González-Espinoza, Cristina E.; Kar, Rajiv K.; Kemmler, Lukas; Kim, Seung Soo; Kongsted, Jacob; Krylov, Anna I.; Lahav, Yigal; Lazaratos, Michalis; NasserEddin, Qays; Navizet, Isabelle; Nemukhin, Alexander; Olivucci, Massimo; Olsen, Jógvan Magnus Haugaard; Alba Ortíz, Alberto; Pieri, Elisa; Rao, Aditya G.; Rhee, Young Min; Ricardi, Niccolò; Sen, Saumik; Solov'yov, Ilia A.; De Vico, Luca; Wesolowski, Tomasz A.; Wiebeler, Christian; Yang, Xuchun; Schapiro, Igor
Frontiers in Multiscale Modeling of Photoreceptor Proteins
Photochemistry and Photobiology, 97 (2) :243-269
2021
Dragelj, Jovan; Mroginski, Maria Andrea; Ebrahimi, Kourosh H.
Hidden in Plain Sight: Natural Products of Commensal Microbiota as an Environmental Selection Pressure for the Rise of New Variants of SARS-CoV-2
ChemBioChem, n/a (n/a)
2021
Kraskov, Anastasia; Sass, Johannes; Nguyen, Anh Duc; Hoang, Tu Oanh; Buhrke, David; Katz, Sagie; Michael, Norbert; Kozuch, Jacek; Zebger, Ingo; Siebert, Friedrich; Scheerer, Patrick; Mroginski, Maria Andrea; Budisa, Nediljko; Hildebrandt, Peter
Local Electric Field Changes during the Photoconversion of the Bathy Phytochrome Agp2
Biochemistry :null
2021

2020

Elghobashi-Meinhardt, Nadia; Tombolelli, Daria; Mroginski, Maria-Andrea
QM/MM computations reveal details of the acetyl-CoA synthase catalytic center
BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS, 1864 (7)
Juli 2020
ISSN: 0304-4165
Escobar, Francisco Velazquez; Kneip, Christa; Michael, Norbert; Hildebrandt, Thomas; Tavraz, Neslihan; Gaertner, Wolfgang; Hughes, Jon; Friedrich, Thomas; Scheerer, Patrick; Mroginski, Maria Andrea; Hildebrandt, Peter
The Lumi-R Intermediates of Prototypical Phytochromes
JOURNAL OF PHYSICAL CHEMISTRY B, 124 (20) :4044-4055
Mai 2020
ISSN: 1520-6106
Kruse, Fabian; Nguyen, Anh Duc; Dragelj, Jovan; Schlesinger, Ramona; Heberle, Joachim; Mroginski, Maria Andrea; Weidinger, Inez M.
Characterisation of the Cyanate Inhibited State of Cytochrome c Oxidase (vol 10, 3863, 2020)
SCIENTIFIC REPORTS, 10 (1)
April 2020
ISSN: 2045-2322
Kraskov, Anastasia; Nguyen, Anh Duc; Goerling, Jan; Buhrke, David; Escobar, Francisco Velazquez; Lopez, Maria Fernandez; Michael, Norbert; Sauthof, Luisa; Schmidt, Andrea; Piwowarski, Patrick; Yang, Yang; Stensitzki, Till; Adam, Suliman; Bartl, Franz; Schapiro, Igor; Heyne, Karsten; Siebert, Friedrich; Scheerer, Patrick; Mroginski, Maria Andrea; Hildebrandt, Peter
Intramolecular Proton Transfer Controls Protein Structural Changes in Phytochrome
BIOCHEMISTRY, 59 (9) :1023-1037
März 2020
ISSN: 0006-2960
Battocchio, Giovanni; González, Ronald; Rao, Aditya G.; Schapiro, Igor; Mroginski, Maria Andrea
Dynamic Properties of the Photosensory Domain of Deinococcus radiodurans Bacteriophytochrome
JOURNAL OF PHYSICAL CHEMISTRY B, 124 (9) :1740-1750
März 2020
ISSN: 1520-6106
Moubarak, Samah; Elghobashi-Meinhardt, N.; Tombolelli, Dania; Mroginski, Maria Andrea
Probing the Structure of [NiFeSe] Hydrogenase with QM/MM Computations
APPLIED SCIENCES-BASEL, 10 (3)
Februar 2020
Buhrke, David; Battocchio, Giovanni; Wilkening, Svea Kristina; Blain-Hartung, Matthew; Baumann, Tobias; Schmitt, Franz-Josef; Friedrich, Thomas; Mroginski, Maria-Andre; Hildebrandt, Peter
Red, Orange, Green: Light- and Temperature-Dependent Color Tuning in a Cyanobacteriochrome
BIOCHEMISTRY, 59 (4) :509-519
Februar 2020
ISSN: 0006-2960

2019

González, Ronald; Mroginski, Maria A.
Fully Quantum Chemical Treatment of Chromophore-Protein Interactions in Phytochromes
JOURNAL OF PHYSICAL CHEMISTRY B, 123 (46) :9819-9830
November 2019
ISSN: 1520-6106